Package index • euosi

All functions

cf_ind_importance(): Helper function to weight and correct the risk and scores

checkvar(): Select the correct boundary values (min and max) for a given parameter

oci_c_magnesium_cz(): Calculate the magnesium availability index in Czech Republic

oci_c_magnesium_ee(): Calculate the magnesium availability index in Estonia

osi_b_pmn(): Calculate the index for the microbial biological activity (wrapper function)

osi_b_pmn_eu(): Calculate the index for the microbial biological activity across the EU

osi_b_pmn_nl(): Calculate the index for the microbial biological activity in the Netherlands

osi_biodiversity(): Calculate a biodiversity index

osi_c_boron(): Calculate the boron availability index (wrapper function)

osi_c_boron_ch(): Calculate the boron availability index in Switzerland

osi_c_boron_de(): Calculate the boron availability index in Germany

osi_c_boron_fr(): Calculate the B availability index for agricultural soils in France

osi_c_boron_ie(): Calculate the boron availability index in Ireland

osi_c_boron_nl(): Calculate the B availability index for agricultural soils in the Netherlands

osi_c_boron_se(): Calculate the boron availability index in Sweden

osi_c_boron_uk(): Calculate the boron availability index in United Kingdom

osi_c_copper(): Calculate the copper availability index (wrapper function)

osi_c_copper_fr(): Calculate the Cu availability index for France

osi_c_magnesium(): Calculate the magnesium availability index (wrapper function)

osi_c_magnesium_at(): Calculate the magnesium availability index in Austria

osi_c_magnesium_ch(): Calculate the magnesium availability index in Switzerland

osi_c_magnesium_de(): Calculate the magnesium availability index in Germany

osi_c_magnesium_dk(): Calculate the magnesium availability index in Denmark

osi_c_magnesium_es(): Calculate the magnesium availability index in Spain

osi_c_magnesium_fi(): Calculate the magnesium availability index in Finland

osi_c_magnesium_fr(): Calculate the Mg availability index for France

osi_c_magnesium_hu(): Calculate the magnesium availability index in Hungary

osi_c_magnesium_ie(): Calculate the magnesium availability index in Ireland

osi_c_magnesium_it(): Calculate the magnesium availability index in Italy

osi_c_magnesium_lt(): Calculate the magnesium availability index in Lithuania

osi_c_magnesium_lv(): Calculate the magnesium availability index in Latvia

osi_c_magnesium_nl(): Calculate the capacity of soils to supply Magnesium

osi_c_magnesium_pl(): Calculate the magnesium availability index in Poland

osi_c_magnesium_se(): Calculate the magnesium availability index in Sweden

osi_c_magnesium_sk(): Calculate the magnesium availability index in Slovak Republic

osi_c_magnesium_sl(): Calculate the magnesium availability index in Slovenia

osi_c_magnesium_uk(): Calculate the magnesium availability index in United Kingdom

osi_c_nitrogen(): Calculate the soil nitrogen supplying capacity (wrapper function)

osi_c_nitrogen_be(): Calculate the soil nitrogen supplying capacity in Belgium

osi_c_nitrogen_de(): Calculate the soil nitrogen supplying capacity in Germany

osi_c_nitrogen_eu(): Calculate the soil nitrogen supplying capacity template in Europe

osi_c_nitrogen_fr(): Calculate the soil nitrogen supplying capacity in France

osi_c_nitrogen_nl(): Calculate the soil nitrogen supplying capacity in the Netherlands

osi_c_ph(): Calculate the pH index (wrapper function)

osi_c_ph_at(): Calculate the pH index in Austria

osi_c_ph_be(): Calculate the pH index for Belgium

osi_c_ph_ch(): Calculate the pH index for Switzerland

osi_c_ph_de(): Calculate the pH index for soils in Germany

osi_c_ph_fi(): Calculate the pH index for Finland

osi_c_ph_fr(): Calculate the pH index for France

osi_c_ph_ie(): Calculate the pH index in Ireland

osi_c_ph_nl(): Calculate the distance for target for soil pH in view of the BLN production function

osi_c_ph_se(): Calculate the pH index in Sweden

osi_c_ph_uk(): Calculate the pH index in United Kingdom

osi_c_phosphor(): Calculate the phosphate availability index (wrapper function)

osi_c_phosphor_at(): Calculate the phosphorus availability index in Austria

osi_c_phosphor_be(): Calculate the phosphorus availability index in Belgium

osi_c_phosphor_ch(): Calculate the phosphorus availability index in Switzerland

osi_c_phosphor_cz(): Calculate the phosphorus availability index in Czech Republic

osi_c_phosphor_de(): Calculate the phosphate availability index in Germany

osi_c_phosphor_dk(): Calculate the phosphate availability index in Denmark

osi_c_phosphor_ee(): Calculate the phosphorus availability index in Estonia

osi_c_phosphor_es(): Calculate the phosphate availability index in Spain

osi_c_phosphor_fi(): Calculate the phosphorus availability index in Finland

osi_c_phosphor_fr(): Calculate the phosphate availability index in France

osi_c_phosphor_hu(): Calculate the phosphorus availability index in Hungary

osi_c_phosphor_ie(): Calculate the phosphate availability index in Ireland

osi_c_phosphor_it(): Calculate the phosphate availability index in Italy

osi_c_phosphor_lt(): Calculate the phosphorus availability index in Lithuania

osi_c_phosphor_lv(): Calculate the phosphorus availability index in Latvia

osi_c_phosphor_nl(): Calculate the phosphate availability index in the Netherlands

osi_c_phosphor_no(): Calculate the phosphorus availability index in Norway

osi_c_phosphor_pl(): Calculate the phosphorus availability index in Poland

osi_c_phosphor_se(): Calculate the phosphate availability index in Sweden

osi_c_phosphor_sk(): Calculate the phosphorus availability index in Slovak Republic

osi_c_phosphor_sl(): Calculate the phosphorus availability index in Slovenia

osi_c_phosphor_uk(): Calculate the phosphate availability index in United Kingdom

osi_c_potassium(): Calculate the K availability index (wrapper function)

osi_c_potassium_at(): Calculate the potassium availability index in Austria

osi_c_potassium_be(): Calculate the potassium availability index in Belgium

osi_c_potassium_ch(): Calculate the potassium availability index in Switzerland

osi_c_potassium_cz(): Calculate the potassium availability index in Czech Republic

osi_c_potassium_de(): Calculate the potassium availability index in Germany

osi_c_potassium_dk(): Calculate the potassium availability index in Denmark

osi_c_potassium_ee(): Calculate the potassium availability index in Estonia

osi_c_potassium_es(): Calculate the potassium availability index in Spain

osi_c_potassium_fi(): Calculate the potassium availability index in Finland

osi_c_potassium_fr(): Calculate the potassium availability index in France

osi_c_potassium_hu(): Calculate the potassium availability index in Hungary

osi_c_potassium_ie(): Calculate the potassium availability index in Ireland

osi_c_potassium_it(): Calculate the potassium availability index in Italy

osi_c_potassium_lt(): Calculate the potassium availability index in Lithuania

osi_c_potassium_lv(): Calculate the potassium availability index in Latvia

osi_c_potassium_nl(): Calculate the K availability index for the Netherlands

osi_c_potassium_no(): Calculate the potassium availability index in Norway

osi_c_potassium_pl(): Calculate the potassium availability index in Poland

osi_c_potassium_se(): Calculate the potassium availability index in Sweden

osi_c_potassium_sk(): Calculate the potassium availability index in Slovak Republic

osi_c_potassium_sl(): Calculate the potassium availability index in Slovenia

osi_c_potassium_uk(): Calculate the potassium availability index in United Kingdom

osi_c_zinc(): Calculate the Zinc availability index for agricultural soils (wrapper function)

osi_c_zinc_de(): Calculate the zinc availability index in Germany

osi_c_zinc_fr(): Calculate the Zn availability index for agricultural soils in France

osi_c_zinc_ie(): Calculate the Zn availability index for agricultural soils in Ireland

osi_c_zinc_nl(): Calculate the Zn availability index for the Netherlands

osi_c_zinc_uk(): Calculate the Zn availability index for agricultural soils in United Kingdom

osi_carbon(): Calculate a carbon index

osi_clim: Averaged climatic conditions per country

osi_conv_hwb(): Calculate A_B_HW

osi_conv_magnesium(): Estimate soil extractable magnesium (-)

osi_conv_npmn(): Calculate potential mineralizable N for agricultural soils default values are taken from global ISRIC database

osi_conv_ph(): Estimate soil pH values (-)

osi_conv_phosphor(): Estimate soil extractable phosphorus (-)

osi_conv_potassium(): Estimate soil extractable potassium (-)

osi_conv_som(): Estimate soil organic matter and nutrient values (-)

osi_countries: Table with country codes used in the package

osi_crops: Linking table between crops and different functions in OBIC

osi_erosion(): Calculate the water erosion index using RUSLE approach

osi_evaluate_logistic(): Evaluate a soil quality function using the general logistic function

osi_evaluate_logistic_gaus_down(): Evaluate logistically initially and gausian eventually

osi_evaluate_parabolic(): Evaluate a soil quality function using a parabolic function

osi_farm: Example farm database to illustrate the functionality of the euosi package

osi_field(): Calculate the Open Soil Index score for a single field using input from LUCAS

osi_field_dt(): Calculate the OSI score for one field using a data.table as input

osi_get_TEXTURE_BE(): Estimate soil texture according to Belgium classification

osi_get_TEXTURE_GEPPA(): Estimate soil texture according to GEPPA classification

osi_get_TEXTURE_HYPRES(): Estimate soil texture according to HYPRES classification

osi_get_TEXTURE_USDA(): Estimate soil texture according to USDA classification

osi_gw_nleach(): Calculate the risk for nitrogen leaching in Europe

osi_gw_nleach_be(): Calculate the risk for nitrogen leaching in Belgium

osi_gw_nleach_eu(): Calculate the risk for nitrogen leaching template for EU

osi_gw_nleach_fi(): Calculate the risk for nitrogen leaching in Finland

osi_gw_nleach_fr(): Calculate the risk for nitrogen leaching in France

osi_nut_k(): Calculate the K excess index (wrapper function)

osi_nut_k_at(): Calculate the potassium excess index in Austria

osi_nut_k_be(): Calculate the potassium excess index in Belgium

osi_nut_k_ch(): Calculate the potassium excess index in Switzerland

osi_nut_k_cz(): Calculate the potassium excess index in Czech Republic

osi_nut_k_de(): Calculate the potassium excess index in Germany

osi_nut_k_dk(): Calculate the potassium excess index in Denmark

osi_nut_k_ee(): Calculate the potassium excess index in Estonia

osi_nut_k_es(): Calculate the potassium excess index in Spain

osi_nut_k_fi(): Calculate the potassium excess index in Finland

osi_nut_k_fr(): Calculate the potassium excess index in France

osi_nut_k_hu(): Calculate the potassium excess index in Hungary

osi_nut_k_ie(): Calculate the potassium excess index in Ireland

osi_nut_k_it(): Calculate the potassium excess index in Italy

osi_nut_k_lt(): Calculate the potassium excess index in Lithuania

osi_nut_k_lv(): Calculate the potassium excess index in Latvia

osi_nut_k_nl(): Calculate the K excess index for the Netherlands

osi_nut_k_no(): Calculate the potassium excess index in Norway

osi_nut_k_pl(): Calculate the potassium excess index in Poland

osi_nut_k_se(): Calculate the potassium excess index in Sweden

osi_nut_k_sk(): Calculate the potassium excess index in Slovak Republic

osi_nut_k_sl(): Calculate the potassium excess index in Slovenia

osi_nut_k_uk(): Calculate the potassium excess index in United Kingdom

osi_nut_p(): Calculate the phoshporus excesss index (wrapper function)

osi_nut_p_at(): Calculate the phosphorus excess index in Austria

osi_nut_p_be(): Calculate the phosphorus excess index in Belgium

osi_nut_p_ch(): Calculate the phosphorus excess index in Switzerland

osi_nut_p_cz(): Calculate the phosphorus excess index in Czech Republic

osi_nut_p_de(): Calculate the phosphate excess index in Germany

osi_nut_p_dk(): Calculate the phosphate excess index in Denmark

osi_nut_p_ee(): Calculate the phosphorus excess index in Estonia

osi_nut_p_es(): Calculate the phosphate excess index in Spain

osi_nut_p_fi(): Calculate the phosphorus excess index in Finland

osi_nut_p_fr(): Calculate the phosphorus excess index in France

osi_nut_p_hu(): Calculate the phosphorus excess index in Hungary

osi_nut_p_ie(): Calculate the phosphate excess index in Ireland

osi_nut_p_it(): Calculate the phosphate excess index in Italy

osi_nut_p_lt(): Calculate the phosphorus excess index in Lithuania

osi_nut_p_lv(): Calculate the phosphorus excess index in Latvia

osi_nut_p_nl(): Calculate the phosphate excess index in the Netherlands

osi_nut_p_no(): Calculate the phosphorus excess index in Norway

osi_nut_p_pl(): Calculate the phosphorus excess index in Poland

osi_nut_p_se(): Calculate the phosphate excess index in Sweden

osi_nut_p_sk(): Calculate the phosphorus excess index in Slovak Republic

osi_nut_p_sl(): Calculate the phosphorus excess index in Slovenia

osi_nut_p_uk(): Calculate the phosphate excess index in United Kingdom

osi_p_crumbleability(): Calculate crumbleability index in the topsoil for all EU countries

osi_p_density(): Calculate the bulk density

osi_p_paw(): Calculate indicator for plant available water

osi_p_wef(): Calculate indicator for wind erodibility

osi_p_whc(): Calculate indicators for water holding capacity in the topsoil

osi_parms: Table with OSI parameters being used in the package

osi_plot_shi(): This function calculates the phosphate availability.

osi_soiltype: Table with country specific soil types being used to evaluate soil quality

osi_thresholds: Table with country specific threshold values to evaluate soilquality' This table contains the evaluation coefficients to convert a soil function value into a soil quality score ranging from 0 to 1. The scoring function migh vary per country, indicator and subcatogries defined by variable categories of soil and crop types.

osi_vars_input: A dataset with all input variables required by the euosi package

osi_vars_output: A dataset with all output variables generated by the euosi package

pF_curve(): Water retention curve

pFpara_class(): Parameter estimation based on class of Staringreeks (Tabel 3, Wosten 2001)

pFpara_ptf_Wosten1999(): Estimate water retention curve parameters based on Wosten 1999

pFpara_ptf_Wosten2001(): Estimate water retention curve parameters based on Wosten 2001